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Structure & Deep Data of Bicyclomycin (C12H18N2O7)

Identification of Bicyclomycin Chemical Compound

2D chemical structure image of Bicyclomycin
Chemical Formula C12H18N2O7
Molecular Weight 302.28052 g/mol
IUPAC Name (1S,6R)-6-hydroxy-5-methylidene-1-[(1S,2S)-1,2,3-trihydroxy-2-methylpropyl]-2-oxa-7,9-diazabicyclo[4.2.2]decane-8,10-dione
SMILES String CC(O)(CO)C(O)C12NC(=O)C(O)(NC1=O)C(=C)CCO2
InChI InChI=1S/C12H18N2O7/c1-6-3-4-21-12(7(16)10(2,19)5-15)9(18)13-11(6,20)8(17)14-12/h7,15-16,19-20H,1,3-5H2,2H3,(H,13,18)(H,14,17)/t7-,10-,11+,12-/m0/s1
InChIKey WOUDXEYYJPOSNE-VKZDFBPFSA-N

Chemical Structure Description

A chemical structure of a molecule includes the arrangement of atoms and the chemical bonds that hold the atoms together. The Bicyclomycin molecule contains a total of 40 bond(s). There are 22 non-H bond(s), 3 multiple bond(s), 3 rotatable bond(s), 3 double bond(s), 1 six-membered ring(s), 2 eight-membered ring(s), 2 secondary amide(s) (aliphatic), 4 hydroxyl group(s), 1 primary alcohol(s), 1 secondary alcohol(s), 1 tertiary alcohol(s), and 1 ether(s) (aliphatic). Images of the chemical structure of Bicyclomycin are given below:

2D chemical structure image of Bicyclomycin
2-dimensional (2D) chemical structure image of Bicyclomycin
3D chemical structure image of Bicyclomycin
3-dimensional (3D) chemical structure image of Bicyclomycin

The 2D chemical structure image of Bicyclomycin is also called skeletal formula, which is the standard notation for organic molecules. The carbon atoms in the chemical structure of Bicyclomycin are implied to be located at the corner(s) and hydrogen atoms attached to carbon atoms are not indicated – each carbon atom is considered to be associated with enough hydrogen atoms to provide the carbon atom with four bonds.

The 3D chemical structure image of Bicyclomycin is based on the ball-and-stick model which displays both the three-dimensional position of the atoms and the bonds between them. The radius of the spheres is therefore smaller than the rod lengths in order to provide a clearer view of the atoms and bonds throughout the chemical structure model of Bicyclomycin. Download structure data file (SDF/MOL) file of this compound.


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Interactive 3D Visualization

For a better understanding of the chemical structure, an interactive 3D visualization of Bicyclomycin is provided here.

The Bicyclomycin molecule shown in the visualization screen can be rotated interactively by keep clicking and moving the mouse button. Mouse wheel zoom is available as well – the size of the Bicyclomycin molecule can be increased or decreased by scrolling the mouse wheel.

The information of the atoms, bonds, connectivity and coordinates included in the chemical structure of Bicyclomycin can easily be identified by this visualization. By right-clicking the visualization screen, various other options are available including the visualization of van der Waals surface and exporting to an image file.


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Additional Information for Identifying Bicyclomycin Molecule

  • SMILES (Simplified Molecular-Input Line-Entry System) string of Bicyclomycin

    The SMILES string of Bicyclomycin is CC(O)(CO)C(O)C12NC(=O)C(O)(NC1=O)C(=C)CCO2, which can be can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the Bicyclomycin.

  • Structure Data File (SDF/MOL File) of Bicyclomycin

    The structure data file (SDF/MOL File) of Bicyclomycin is available for download in the SDF page of Bicyclomycin, which provides the information about the atoms, bonds, connectivity and coordinates of Bicyclomycin. The Bicyclomycin structure data file can be imported to most of the cheminformatics software systems and applications.

  • Chemical formula of Bicyclomycin

    The molecular formula of Bicyclomycin is available in chemical formula page of Bicyclomycin, which identifies each constituent element by its chemical symbol and indicates the proportionate number of atoms of each element.

  • Molecular weight of Bicyclomycin

    The molecular weight of Bicyclomycin is available in molecular weight page of Bicyclomycin, which is calculated as the sum of the atomic weights of each constituent element multiplied by the number of atoms of that element in the molecular formula.

  • Other names (synonyms) or registry numbers of Bicyclomycin

    The Bicyclomycin compound may be called differently depending on the various different situations of industrial applications. Below are the list of the other names (synonyms) of Bicyclomycin including the various registry numbers, if available:

    • (1R,6S)-1-hydroxy-2-methylidene-6-[(1S,2S)-1,2,3-trihydroxy-2-methylpropyl]-5-oxa-8,10-diazabicyclo[4.2.2]decane-7,9-dione
    • CGP-3543/E
    • CGP 3543E
    • BDBM22600
    • J03U9E2P82
    • 38129-37-2
    • C12H18N2O7
    • (1R*,6S*)-6-Hydroxy-5-methylene-1-((1R*,2R*)-1,2,3-trihydroxy-2-methylpropyl)-2-oxa-7,9-diazabicyclo(4.2.2)decan-8,10-dione
    • CGP 3543/E
    • FR 1881
    • CGP 354E
    • WS 4545
    • Bicozamicina [INN-Spanish]
    • Bicozamycinum [INN-Latin]
    • Bicozamycine [INN-French]
    • Antibiotic WS 4545
    • Bicozamycin [INN]
    • Antibiotic 5879
    • Bacfeed
    • Bicozamycinum
    • Bicozamycine
    • Bicozamicina
    • Bacteron
    • Bicozamycin
    • Aizumycin
    • Bicyclomycin

Bicyclomycin Identification Summary Frequently Asked Questions (FAQs)

What’s the chemical formula of Bicyclomycin?
C12H18N2O7
How many atoms and what are the elements included the Bicyclomycin molecule?
39 atom(s) - 18 Hydrogen atom(s), 12 Carbon atom(s), 2 Nitrogen atom(s), and 7 Oxygen atom(s)
How many chemical bonds and what kind of bonds are included the Bicyclomycin structure?
40 bond(s) - 22 non-H bond(s), 3 multiple bond(s), 3 rotatable bond(s), 3 double bond(s), 1 six-membered ring(s), 2 eight-membered ring(s), 2 secondary amide(s) (aliphatic), 4 hydroxyl group(s), 1 primary alcohol(s), 1 secondary alcohol(s), 1 tertiary alcohol(s), and 1 ether(s) (aliphatic)
What’s the Bicyclomycin’s molecular weight?
302.28052 g/mol
What’s the SMILES code of Bicyclomycin?
CC(O)(CO)C(O)C12NC(=O)C(O)(NC1=O)C(=C)CCO2
What’s the InChI string of Bicyclomycin?
InChI=1S/C12H18N2O7/c1-6-3-4-21-12(7(16)10(2,19)5-15)9(18)13-11(6,20)8(17)14-12/h7,15-16,19-20H,1,3-5H2,2H3,(H,13,18)(H,14,17)/t7-,10-,11+,12-/m0/s1
What’s the InChIKey code of Bicyclomycin?
WOUDXEYYJPOSNE-VKZDFBPFSA-N

668 The contents of this page can freely be shared if cited as follows:
Source: Chemical Compounds Deep Data Source (CCDDS; https://www.molinstincts.com) based on 41 patented QSQN and QN technology
commercialized into Mol-Instincts database and ChemRTP, ChemEssen, Inc (2024).

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