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Structure & Deep Data of Ziagen (C14H18N6O)

Identification of Ziagen Chemical Compound

2D chemical structure image of Ziagen
Chemical Formula C14H18N6O
Molecular Weight 286.33232 g/mol
IUPAC Name [(1S)-4-[2-amino-6-(cyclopropylamino)-9H-purin-9-yl]cyclopent-2-en-1-yl]methanol
SMILES String Nc4nc(NC1CC1)c3ncn(C2CC(CO)C=C2)c3n4
InChI InChI=1S/C14H18N6O/c15-14-18-12(17-9-2-3-9)11-13(19-14)20(7-16-11)10-4-1-8(5-10)6-21/h1,4,7-10,21H,2-3,5-6H2,(H3,15,17,18,19)/t8-,10?/m1/s1
InChIKey MCGSCOLBFJQGHM-HNHGDDPOSA-N

Chemical Structure Description

A chemical structure of a molecule includes the arrangement of atoms and the chemical bonds that hold the atoms together. The Ziagen molecule contains a total of 42 bond(s). There are 24 non-H bond(s), 11 multiple bond(s), 4 rotatable bond(s), 1 double bond(s), 10 aromatic bond(s), 1 three-membered ring(s), 2 five-membered ring(s), 1 six-membered ring(s), 1 nine-membered ring(s), 1 primary amine(s) (aromatic), 1 secondary amine(s) (aromatic), 1 hydroxyl group(s), 1 primary alcohol(s), 1 Imidazole(s), and 1 Pyrimidine(s). Images of the chemical structure of Ziagen are given below:

2D chemical structure image of Ziagen
2-dimensional (2D) chemical structure image of Ziagen
3D chemical structure image of Ziagen
3-dimensional (3D) chemical structure image of Ziagen

The 2D chemical structure image of Ziagen is also called skeletal formula, which is the standard notation for organic molecules. The carbon atoms in the chemical structure of Ziagen are implied to be located at the corner(s) and hydrogen atoms attached to carbon atoms are not indicated – each carbon atom is considered to be associated with enough hydrogen atoms to provide the carbon atom with four bonds.

The 3D chemical structure image of Ziagen is based on the ball-and-stick model which displays both the three-dimensional position of the atoms and the bonds between them. The radius of the spheres is therefore smaller than the rod lengths in order to provide a clearer view of the atoms and bonds throughout the chemical structure model of Ziagen. Download structure data file (SDF/MOL) file of this compound.


Interactive 3D Visualization

For a better understanding of the chemical structure, an interactive 3D visualization of Ziagen is provided here.

The Ziagen molecule shown in the visualization screen can be rotated interactively by keep clicking and moving the mouse button. Mouse wheel zoom is available as well – the size of the Ziagen molecule can be increased or decreased by scrolling the mouse wheel.

The information of the atoms, bonds, connectivity and coordinates included in the chemical structure of Ziagen can easily be identified by this visualization. By right-clicking the visualization screen, various other options are available including the visualization of van der Waals surface and exporting to an image file.


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  • Name: ethanol
  • CAS #: 64-17-5
  • Formula: C2H5OH
  • Smiles: CCO
  • InChI: InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3
  • InChIKey: LFQSCWFLJHTTHZ-UHFFFAOYSA-N

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Additional Information for Identifying Ziagen Molecule

  • SMILES (Simplified Molecular-Input Line-Entry System) string of Ziagen

    The SMILES string of Ziagen is Nc4nc(NC1CC1)c3ncn(C2CC(CO)C=C2)c3n4, which can be can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the Ziagen.

  • Structure Data File (SDF/MOL File) of Ziagen

    The structure data file (SDF/MOL File) of Ziagen is available for download in the SDF page of Ziagen, which provides the information about the atoms, bonds, connectivity and coordinates of Ziagen. The Ziagen structure data file can be imported to most of the cheminformatics software systems and applications.

  • Chemical formula of Ziagen

    The molecular formula of Ziagen is available in chemical formula page of Ziagen, which identifies each constituent element by its chemical symbol and indicates the proportionate number of atoms of each element.

  • Molecular weight of Ziagen

    The molecular weight of Ziagen is available in molecular weight page of Ziagen, which is calculated as the sum of the atomic weights of each constituent element multiplied by the number of atoms of that element in the molecular formula.

  • Other names (synonyms) or registry numbers of Ziagen

    The Ziagen compound may be called differently depending on the various different situations of industrial applications. Below are the list of the other names (synonyms) of Ziagen including the various registry numbers, if available:

    • 4R-[2-Amino-6-(cyclopropylamino)-9H-purin-9-yl]-2-cyclopentene-1S-methanol
    • Ziagen

Ziagen Identification Summary Frequently Asked Questions (FAQs)

What’s the chemical formula of Ziagen?
C14H18N6O
How many atoms and what are the elements included the Ziagen molecule?
39 atom(s) - 18 Hydrogen atom(s), 14 Carbon atom(s), 6 Nitrogen atom(s), and 1 Oxygen atom(s)
How many chemical bonds and what kind of bonds are included the Ziagen structure?
42 bond(s) - 24 non-H bond(s), 11 multiple bond(s), 4 rotatable bond(s), 1 double bond(s), 10 aromatic bond(s), 1 three-membered ring(s), 2 five-membered ring(s), 1 six-membered ring(s), 1 nine-membered ring(s), 1 primary amine(s) (aromatic), 1 secondary amine(s) (aromatic), 1 hydroxyl group(s), 1 primary alcohol(s), 1 Imidazole(s), and 1 Pyrimidine(s)
What’s the Ziagen’s molecular weight?
286.33232 g/mol
What’s the SMILES code of Ziagen?
Nc4nc(NC1CC1)c3ncn(C2CC(CO)C=C2)c3n4
What’s the InChI string of Ziagen?
InChI=1S/C14H18N6O/c15-14-18-12(17-9-2-3-9)11-13(19-14)20(7-16-11)10-4-1-8(5-10)6-21/h1,4,7-10,21H,2-3,5-6H2,(H3,15,17,18,19)/t8-,10?/m1/s1
What’s the InChIKey code of Ziagen?
MCGSCOLBFJQGHM-HNHGDDPOSA-N

16 The contents of this page can freely be shared if cited as follows:
Source: Chemical Compounds Deep Data Source (CCDDS; https://www.molinstincts.com) based on 41 patented QSQN and QN technology
commercialized into Mol-Instincts database and ChemRTP, ChemEssen, Inc (2024).

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